Publications

Chen Liu, Danqi Liao, Shuangge Wang (2023). Towards a Large-Scale Unbiased Machine Learning Benchmark for Cell Instance Segmentation: Final Report for CPSC 537 Intro to Database Systems. Course Project Report.

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Danqi Liao, Chen Liu, Ben Christensen, Alexander Tong, Guillaume Huguet, Guy Wolf, Maximilian Nickel, Ian Adelstein, Smita Krishnaswamy (2023). Assessing Neural Network Representations During Training Using Noise-Resilient Diffusion Spectral Entropy. In ICML 2023 TAG-ML Workshop.

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Chen Liu (2023). A Technical Deep Dive into Drag Your GAN (DragGAN). Technical Blog.

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Chen Liu, Matthew Amodio, Liangbo L. Shen, Feng Gao, Arman Avesta, Sanjay Aneja, Jay Wang, Lucian V. Del Priore, Smita Krishnaswamy (2023). CUTS: A Framework for Multigranular Unsupervised Medical Image Segmentation. In ArXiv.

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Chen Liu, Nanyan Zhu, Haoran Sun, Junhao Zhang, Xinyang Feng, Sabrina Gjerswold-Selleck, Dipika Sikka, Xuemin Zhu, Xueqing Liu, Tal Nuriel, Hong-Jian Wei, Cheng-Chia Wu, Thomas J Vaughan, Andrew F Laine, Frank A Provenzano, Scott A Small, Jia Guo (2022). Deep Learning of MRI Contrast Enhancement for Mapping Cerebral Blood Volume from Single-Modal Non-Contrast Scans of Aging and Alzheimer's Disease Brains. In Frontiers in Aging Neuroscience.

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Chen Liu, Xiaomeng Dong, Michael Potter, Hsi-Ming Chang, Ravi Soni (2022). Adversarial Focal Loss: Asking Your Discriminator for Hard Examples. In ArXiv.

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Nanyan Zhu, Chen Liu, Britney Forsyth, Zakary S Singer, Andrew F Laine, Tal Danino, Jia Guo (2022). Segmentation with Residual Attention U-Net and an Edge-Enhancement Approach Preserves Cell Shape Features. In IEEE EMBC.

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Joan Jiménez-Balado, Alexandra Ycaza Herrera, Kay Igwe, Lynda P Klem, Korhan Buyukturkoglu, Andrei Irimia, Chen Liu, Jia Guo, Adam M Brickman, Teal S Eich (2021). Reduced Hippocampal GABA is associated with Poorer Episodic Memory in Healthy Older Women: A Pilot Study. In Frontiers in Behavioral Neuroscience.

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Dipika Sikka, Nanyan Zhu, Chen Liu, Scott Small, Jia Guo (2021). Predicting Gadolinium Contrast Enhancement for Structural Lesion Analysis using DeepContrast. In ISMRM 2021 1-Page Abstract Oral Presentation.

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Chen Liu, David Jing Ma, Nanyan Zhu, Kay Igwe, Jochen Weber, Roshell Li, Emily Turner Wood, Wafae Labriji, Vasile Stupar, Yanping Sun, Neil Harris, Antoine Depaulis, Florence Fauvelle, Scott A Small, Douglas L Rothman, Jia Guo (2021). JET-A Matlab Toolkit for Automated J-Difference-Edited MR Spectra Processing of In Vivo Mouse MEGA-PRESS Study at 9.4 T. In ISMRM 2021 1-Page Abstract Oral Presentation.

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Florence Fauvelle, Vasile Stupar, Jia Guo, Wafae Labriji, Chen Liu, Alicia Plaindoux, Emmanuel Luc Barbier, Sophie Hamelin, Antoine Depaulis (2021). In Vivo GABA Increase as a Biomarker of the Epileptogenic Zone: an Unbiased Metabolomics Approach. In ISMRM 2021 1-Page Abstract.

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Sabrina Gjerswold-Selleck, Nanyan Zhu, Haoran Sun, Dipika Sikka, Jie Shi, Chen Liu, Tal Nuriel, Scott A Small, Jia Guo (2021). DL-BET-A Deep Learning Based Tool for Automatic Brain Extraction from Structural Magnetic Resonance Images in Mice. In ISMRM 2021 1-Page Abstract.

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Nanyan Zhu, Chen Liu, Sabrina Gjerswold-Selleck, Xinyang Feng, Dipika Sikka, Scott A Small, Jia Guo (2021). Deep Learning Identifies Neuroimaging Signatures of Alzheimer's Disease Using Structural and Artificial Functional MRI Data. In ISMRM 2021 1-Page Abstract.

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Nanyan Zhu, Chen Liu, Xinyang Feng, Dipika Sikka, Sabrina Gjerswold-Selleck, Scott A Small, Jia Guo (2021). Deep Learning Identifies Neuroimaging Signatures of Alzheimer's Disease Using Structural and Synthesized Functional MRI Data. In IEEE ISBI 2021.

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Sophie Hamelin, Vasile Stupar, Lucile Mazière, Jia Guo, Wafae Labriji, Chen Liu, Ludiwine Bretagnolle, Sandrine Parrot, Emmanuel L Barbier, Antoine Depaulis, Florence Fauvelle (2020). In vivo γ‐aminobutyric acid increase as a biomarker of the epileptogenic zone: An unbiased metabolomics approach. In Epilepsia.

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Chen Liu, Nanyan Zhu, Xinyang Feng, Frank A Provenzano, John T Vaughan, Scott A Small, Jia Guo (2020). Substituting Gadolinium In Human Brain MRI Using DeepContrast. In ISMRM 2020 1-Page Abstract Oral Power Pitch.

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Haoran Sun, Xueqing Liu, Xinyang Feng, Chen Liu, Nanyan Zhu, Sabrina Josefina Gjerswold-Selleck, Hong-Jian Wei, Pavan Shankar Upadhyayula, Angeliki Mela, Cheng-Chia Wu, Peter Canoll, Andrew F Laine, John Thomas Vaughan, Scott A Small, Jia Guo (2020). Substituting Gadolinium In Brain MRI Using DeepContrast -- A Proof-Of-Concept Study in Mice. In ISMRM 2020 1-Page Abstract Oral Power Pitch.

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Haoran Sun, Xueqing Liu, Xinyang Feng, Chen Liu, Nanyan Zhu, Sabrina J Gjerswold-Selleck, Hong-Jian Wei, Pavan S Upadhyayula, Angeliki Mela, Cheng-Chia Wu, Peter D Canoll, Andrew F Laine, J Thomas Vaughan, Scott A Small, Jia Guo (2020). Substituting Gadolinium in Brain MRI Using DeepContrast. In IEEE ISBI 2020.

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Nanyan Zhu, Chen Liu, Andrew F. Laine, Jia Guo (2020). Understanding and Modeling Climate Impacts on Photosynthetic Dynamics with FLUXNET Data and Neural Networks. In Energies.

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